IntegronFinder
v2.0.2
User Guide
Introduction
Installation
IntegronFinder dependencies
Installation procedure
From Version 2.0
From Version 1.5.1 and after
For Version 1.5 and before
Uninstallation procedure
From Version 1.5.1 and after
From Version 1.0 to Version 1.5
How to install Python
What’s new ?
In Version 2.0
Quick start
For impatient
Input and Outputs
Inputs
Custom protein file
Outputs
For everyone
Thorough local detection
CALIN detection
Functional annotation
Search for promoter and
attI
sites
Keep intermediate results
Topology
For big data people
Parallelization
For integron diggers
Clustering of elements
Integrase
attC
evalue
attC
size
Palindromes
attC
alignements
web server
Galaxy
How to use it
Results
References
Developer Guide
Developer installation
Build a new release
Send changes to upstream repository
Tests
Running tests
Adding tests
Documentation
Architecture Overview
Project files and directories
Files
Directories
Technical overview
Integron_finder API Reference
annotation
attc
config
hmm
infernal
integrase
integron
prot_db
results
topology
utils
IntegronFinder
Docs
»
Python Module Index
Python Module Index
i
i
integron_finder
integron_finder.topology
Read the Docs
v: v2.0.2
Versions
latest
stable
v2.0.2
v2.0.1
v2.0
v2.0rc6
v1.5.1
v1.5.0
v1.5
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