integrase¶

integron_finder.integrase.find_integrase(replicon_id, prot_file, out_dir, cfg)[source]¶

Call Prodigal for Gene annotation and hmmer to find integrase, either with phage_int HMM profile or with intI profile.

Parameters:	replicon_id (str) – The Replicon identifier to search integrase into prot_file (str) – the path to the fasta file containing the translation of the replicon. out_dir (str) – the relative path to the directory where prodigal outputs will be stored cfg (a `integron_finder.config.Config` object) – the configuration
Returns:	None, the results are written on the disk