IntegronFinder
  • User Guide
    • Introduction
    • Installation
      • IntegronFinder dependencies
      • Installation procedure
        • From Version 2.0
        • From Version 1.5.1 and after
        • For Version 1.5 and before
      • Uninstallation procedure
        • From Version 1.5.1 and after
        • From Version 1.0 to Version 1.5
      • How to install Python
    • What’s new ?
      • V2.0.6
      • V2.0.5
      • V2.0.3
      • In Version 2.0
    • Quick start
      • For impatient
      • Input and Outputs
        • Inputs
        • Custom protein file
        • Outputs
      • For everyone
        • Thorough local detection
        • CALIN detection
        • Functional annotation
        • Search for promoter and attI sites
        • Keep intermediate results
        • Topology
      • For big data people
        • Parallelization
      • For integron diggers
        • Clustering of elements
        • Integrase
        • attC evalue
        • attC size
        • Palindromes
        • attC alignements
    • web server
      • Galaxy
        • How to use it
        • Results
    • References
  • Developer Guide
    • Developer installation
      • Dependencies
      • Integron_Finder testing procedures
        • Coverage
      • Documentation
      • Build a new release
      • Send changes to upstream repository
    • Architecture Overview
      • Project files and directories
        • Files
        • Directories
      • Technical overview
    • Integron_finder API Reference
      • annotation
      • attc
      • config
      • hmm
      • infernal
      • integrase
      • integron
      • prot_db
      • results
      • topology
      • utils
IntegronFinder
  • User Guide
  • View page source

User Guide

  • Introduction
  • Installation
    • IntegronFinder dependencies
    • Installation procedure
    • Uninstallation procedure
    • How to install Python
  • What’s new ?
    • V2.0.6
    • V2.0.5
    • V2.0.3
    • In Version 2.0
  • Quick start
    • For impatient
    • Input and Outputs
    • For everyone
    • For big data people
    • For integron diggers
  • web server
    • Galaxy
  • References
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